Changelog

swfscAirDAS 0.4.0 (dev)

Added ability to read and parse left rear and right rear observers to columns ObsLR and ObsRR, respectively. These should only be relevant for the TURTLE format. Sightings by left rear and right rear observers are considered standard sightings. Additionally, updated the AirDAS TURTLE format PDF to include descriptions of these data
Added “mm” (unidentified marine mammal) to the default airdas species code file
Changed to use proper tidyselect syntax
The DateTime column in airdas_read output now always has a timezone of “” (#7)
Changed ‘Line Number’ to ‘Event Number’ in the Format PDFs, for consistency with shipboard DAS data
Added a function airdas_spcodes_read for reading AirDas SpCodes files in a consistent way. Changed airdas_check to use this function for reading in either the default or a custom SpCodes file [#6]
Moved example data files to an ‘extdata’ folder within ‘inst’
Update roxygen to use markdown
Use stringr functions str_to_lower and str_to_upper, rather than the corresponding base functions
Make RedTide NA for phoecena data [#8]
Ensure that ‘Obs’ output from airdas_sight is lowercase, to match behavior of airdas_sight. In practice, this means that any observer code comparisons done by swfscAirDAS are case-insensitive [#9]

Angles checks: inlcude ObsLR and ObsRR in observer checks; allow ‘zz’ as an observer code; only check for sighting angle for on-effort, standard observers.
Fixed longitude check (#5)
Fixed the lat/lon check to return the proper line number of any errors
Changed the turtle size check in airdas_check to allow turtle sizes to be in increments of 0.5, rather than just whole numbers
Made the valid SpCodes check case-insensitive, and ensure that species codes are made lowercase before doing any comparisons. In practice, this means that any species code actions in swfscAirDAS are case-insensitive

CRAN release: 2024-10-03

Moved repo to https://github.com/swfsc, and updated all associated documentation
Changed license to Apache License (== 2), based on NMFS guidance at https://nmfs-opensci.github.io/GitHub-Guide

CRAN release: 2023-08-08

airdas_sight now has both ObsStd and SightStd columns; SightStd definition updated. airdas_effort standardizes the definition for the ‘included’ column. (#3)
Added purrr as a dependency for airdas_sight functionality

CRAN release: 2022-06-02

CRAN release: 2021-01-10

The ‘segdata’ output of das_effort now includes DateTime1 and DateTime2, the date/time of the start and end points of each segment. The column order of the segdata data frame was also slightly changed for consistency
airdas_chop_condition, airdas_chop_equallength, airdas_chop_section, and airdas_segdata are now exported for documentation purposes only

CRAN release: 2020-09-07

Users can now capitalize all transect codes using the trans.upper argument in das_process
Added info messages to airdas_check, as well as a check for valid latitude and longitude values
Fixed a bug in airdas_check when checking multiple files

Catch up internally with changes made in swfscDAS. This package now depends on swfscDAS version >= 0.3
airdas_sight column name changes: ‘Sp’ is now ‘SpCode’ for consistency with swfscDAS, and ‘TurtleSizeFt’ is now ‘TurtleSize’ since this data can be a character code
Changed airdas_chop_equal to airdas_chop_equallength for naming consistency. This change should not affect users, as it does not affect any of the syntax required when using airdas_effort
Renamed items in effort list output of airdas_effort and airdas_effort_sight: ‘siteinfo’ is now ‘sightinfo’, and segdata columns indicating the number of sightings or animals on a segment are now formatted as ‘description’_‘species code’, e.g. “nSI_mn”
Where applicable, error, warning, and informational messages now report both the file name and line number. This makes the messages more useful when working with concatenated AirDAS objects with multiple files